Tuesday, October 29, 2019

Holling 1959 & Weed et al. 2017

Citations:

Holling, C.S. 1959. The components of predation as revealed by a study of small
Mammal predation of the European pine sawfly. The Canadian Entomologist 91: 293-320.

Weed, A.S., Ayres, M.P., Liebhold, A.M., and Billings, R.F. 2017. Spatio-temporal
Dynamics of a tree-killing beetle and its predator. Ecography 40: 221-234.

Blog author: Bailey McNichol

Author Background:

Crawford Stanley “Buzz” Holling was a Canadian ecologist and an Emeritus Scholar and Professor at the University of Florida. He was one of the founders of the field of ecological economics, and throughout his career merged systems theory and ecology with simulation modeling and policy review. He was also one of the ecologists (along with Brian Walker and others) that introduced important concepts including resilience and adaptive management to the field of ecology. The paper on predation of pine sawflies by small mammals came out of his dissertation research in Canada.

The lead author on the companion paper, Aaron Weed, is an ecologist in the Inventory and Monitoring Division of the National Park Service. He is the lead on long-term monitoring of aquatic and terrestrial resources for the Northeast Temperate Network. His research interests lie at the intersection of the ecology and management of both native and invasive insects and the effects of disturbance on forest ecology. He has worked extensively on the role of density-dependent vs. density-independent factors on population fluctuations of insects, from local to landscape levels.

Holling paper:

Summary of paper, main questions, and results:
Holling begins the paper with a discussion on predator-prey interactions, including the effects of prey selection on predation, shifts in prey populations that occur in the absence of predators, and the role of an environment’s carrying capacity for prey in determining the importance of predation over the large-scale. He indicates that while previous work has offered logical explanations and insights into these dynamics, none of the studies have described the mechanisms responsible for controlling populations. He then introduces the predator-prey relationships between 3 small mammal predators – the masked shrew, short-tail shrew, and the deer mouse – and the prey species the European pine sawfly as a relatively easy model system, given the uniformity of the ecosystem and ease of identifying successful predations events on the pine sawfly cocoons. 

This paper focuses exclusively on direct effects of predation, leaving interactions between indirect population controls (parasites, disease, and predation) for a separate paper. Holling introduced and discussed five components of predation (based on Leopold 1933) that may affect prey mortality: 1) density of prey; 2) density of predators; 3) characteristics of prey; 4) density and quality of alternative foods for predator; and 5) characteristics of the predator. He discussed these in relation to the study, concluding that the simplicity of the experimental design allows us to only majorly consider the prey and predator densities as having an effect on predation. The experiment showed that the number of sawfly cocoons opened by each of the three mammal species increased as the density of cocoons increased until the maximum daily consumption per animal per day was reached. He then discusses four classes of prey characteristics: 1) caloric value of prey; 2) length of prey exposure; 3) attractiveness of the prey; and 4) strength of stimulus used by predators to find prey. Holling’s lab experiments only directly assessed the 4thcharacteristic by experimentally varying the depths of sand covering the sawfly cocoons (and thus the olfactory detection of cocoons by the deer mice) and found that the maximum number of cocoons opened per day decreased as the depth that cocoons were buried at increased.

Overall, he concludes that his study is novel in that it shows the importance of both: a) a change in the numbers of prey consumed per predator (“functional response”), and b) a change in the density of predators (“numerical response”). He also argues that density-independent factors (e.g., climate) can affect numbers of animals within a population but cannot regulate populations (this, then, only occurring due to a density-dependent interaction). Holling ends the paper with a discussion of (and his own support for/against) hypothesized reasons that populations fluctuate, including Thompson’s and Nicholson’s mathematical theories of population regulation and the influence of types of predation.

Summary of experimental methods: 
To account for the environmental densities of predators, prey, and “destroyed” prey (i.e., pine sawflies that have been eaten), Holling measures each of these groups in terms of their numbers per acre. He assessed the numbers of each of the 3 small mammal predators through capture-recapture techniques, where animals are trapped, marked, released, and then population sizes are estimated based on the number of animals that are recaptured. The number of pine sawfly cocoons (available prey) was estimated shortly after the larval drop from the trees and involved sub-sampling leaf litter and duff within a given radius of the crowns of host Scots and jack pine trees. Sawfly cocoons were then collected in September prior to adult emergence to assess the amount of predation that occurred (via destroyed cocoons), along with examination of the stomach contents of trapped mammals. A viral pesticide treatment was also applied within the pine stands, with varying concentrations applied to control populations of the sawflies. Holling also performed laboratory experiments with three male deer mice, varying the densities and depths of sawfly cocoons and introducing two alternative food sources (less palatable dog biscuits and more palatable sunflower seeds) to assess preference and predation rates.

Weed et al. paper:
While Holling drew most of his conclusions from field measurements of predation and experimental lab studies (on a count of predation density per area basis), Weed et al. used a modeling approach to assess factors that influence the stability of predator-prey populations over spatiotemporal scales. They were interested in determining the role of local-level processes on landscape-level patterns of abundance of both predator and prey populations. The prey species in their study was the southern pine beetle (SPB), a primary bark beetle that can kill living pine tree hosts when it occurs at high population densities, and the predator was the clerid beetle (Thanasimus dubius). Although numerous generalist predators can prey upon SPB, the clerid beetle is by far its most important predator and has been shown to have a significant control on population levels throughout SPB’s native range. Previous studies have shown that clerid beetles have a cyclical delayed density-dependent effect on SPB populations – the prey beetle’s population size increases, predator beetles arrive several weeks later to an area with high densities of SPB, the clerid beetles feed aggressively on SPB, and population levels eventually decrease. However, because these oscillations in predator and prey population levels do not hold up over longer time scales (i.e., multi-decadal), Weed et al. aimed to: 1) evaluate factors influencing local population stability using mechanistic models, and 2) estimate the spatial synchrony of the clerid beetle-SPB system.

The data that Weed et al. used were the counts of trapped SPB and clerid beetles from the annual springtime trapping survey, during which traps are deployed throughout the southeastern United States to monitor predator and prey population levels so that management can be focused in areas that have high counts of SPB and low counts of clerids. They analyzed data collected over ~16 years in 95 forests using models that described temporal behavior in the per capita growth rates of SPB and clerids, evaluating the current vs. previous abundance of both the prey and predator species, and including an error term for density-independent effects (i.e., weather). They also characterized the spatial cross-correlation between SPB and clerids, as well as effects of forest composition and structure – specifically, the influence of the density of pines (the required host tree for SPB) – on abundances of both species.

The authors found that population fluctuations of SPB and clerid beetles were tightly temporally linked throughout the region, and that although populations were subjected to density-dependent feedbacks, the dynamics were not periodic as previously found. Synchrony in abundances of both species was highly correlated on an annual basis in 65% of forests, but there was some temporal variation in the degree and pattern of this synchrony. The model including immediate effects of predator and prey abundance best described the population dynamics of both species; prior SPB abundance had a strong negative affect on current population growth (although not at large spatial scales), and prior clerid abundance also had an overall negative feedback. This indicates that effect of clerid beetle abundance on SPB populations over longer time scales was quite variable across the 95 forests. Overall, their results demonstrate a clear correlation between the population dynamics of SPB and clerids over a large spatial scale, but refute the idea that populations of clerid beetles have a delayed density-dependent response to SPB densities.

My Thoughts:

While I agree that the Holling study provided a relatively uncomplicated system for assessing predator-prey dynamics between the mammals and pine sawflies, I wish he would have elaborated more on why the Lincoln’s index vs. the Hayne’s method (which is no longer used) for estimating population sizes were used for the deer mice vs. the shrews. This may have been elaborated upon in his dissertation, but these techniques should have been clarified so that the reader could better understand the advantages and limitations of each. His technique for sub-sampling pine sawfly cocoons seemed more rigorous (and straightforward), although it is impossible to get a completely accurate estimate over a large scale. However, the introduction of an external control on the pine sawfly larva populations (spraying of a virus) was a non-trivial confounding variable. Despite the blocking of different areas of the plantation based on pesticide concentration, I think it is very difficult to isolate how much changes in overall predation over the course of the study might have been affected by changes in predator behavior (which he asserts is negligible) as a result in reduced prey health/quality. I was also somewhat skeptical of his comparison of only 3 deer mice included in the lab experiments to predation that occurred in the field – particularly because two of the mice only had access to older cocoons (which he says DID affect consumption), and only a single mouse was used to study the effects of cocoon depth on predation.

I thought that the Weed et al. manuscript was a very robust, novel, and quantitatively driven approach to characterizing predator-prey dynamics of a well-studied system in the forest entomology literature. While I think that their model selection technique and the parameters that they included were more than adequate for addressing their questions, I felt that their broad conclusions on the importance of local-scale weather patterns and host pine density (AKA basal area) were somewhat unsubstantiated. Fine-scale temperature and precipitation patterns may play a role in SPB densities changing, but there is a strong body of empirical literature that refutes this idea, so for Weed at al. to mention this without any data in their models and based on 1-2 citations is tenuous at best. Additionally, although it is a reasonable assumption that pine basal area should have a strong effect on SPB densities (because they need a high density of host trees to cause an outbreak), their results showed a weakly significant effect of average pine basal area on prey population levels.

9 comments:

  1. The papers were a good fit for each other, and the beetle paper seemed like the perfect read this week in lieu of our conversation on Monday. I personally found the Holling paper to be an informative read with clear ideas logically discussed. I found this approach to understanding predation a bit easier to follow along with, though I agree with Bailey and do not understand the Lincoln’s index vs. the Hayne’s method (or why it was used). I would like to know what the "virus" Holling referred to was since it seemed to play an important role in sawfly populations. At one point, he mentioned treating areas with the virus, which added to my confusion about this. Additionally, I was curious to see if one could relate Holling's "functional" and "numerical" responses of predator-prey dynamics to what we have spoken about before: an arm's race. In my mind, the two principles disagree, but there is a chance I am misunderstanding them both.
    As for the Weed et al. paper, it was not only timely (since we mentioned bark beetles and their trees hosts on Monday), but it also was a great modern follow-up to the Holling paper. It demonstrated a statistical approach to produce an unexpected result: that the host-availability rather than the predator (T. dubius) was suppressing SFB outbreaks. I enjoyed this paper and found I learned something after reading it.

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  2. So far in this course, a good portion of the classic papers have been about theories generated from observational reports or mathematical modeling of ecological phenomenon, so it was nice change of pace to see the experimental methods in the Holling’s paper. I agree with Bailey that there are some issues with the experimental design. The difference in the age of the cocoons used for the experiment that generated the data in Figure 2 is especially problematic because it introduced another variable into the experimental design (Holling does address this, but it seems a better experimental design in the first place would have avoided this issue). It was neat to see that he mentioned that the term “functional response” was “largely ignored in the literature” because the term seems to be pretty commonly used in ecology literature today.

    Holling’s study was confined to one specific tree plantation (and some lab experiments), so it was nice to see a much broader and wider geographic application of the concepts in the companion paper. The conclusion of the paper, that “outbreaks are most likely synchronized by weather,” was an interesting to compare to the Holling paper which stated that “There is abundant evidence that changes in climate, some aspects of which are presumed to have a density-independent action, can lower or raise the numbers of an animal. But this need not be regulation. Regulation will only result from an interaction with a density-dependent factor.”

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  3. This paper by Holling (along with another paper on functional responses he published the same year) is one of my favorite classic papers. Although his experimental methods may not be as robust as we would expect modern methods to be, they were sufficient in allowing him to tease apart the components that determine foraging rate. He uses these components in his other paper to work out the well-known Holling disc equation that is fundamental to predator-prey research even today. I appreciate the work that he put in in this paper to enable the model in his 2nd 1959 paper to be mechanistic. This makes the model much more informative than a purely descriptive model and allows us to interpret what changes in each part of the model mean for a real biological system.

    I enjoyed reading the companion paper. I am personally very interested in how predators and prey use space to their advantage, so this was an interesting read!

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  4. While the experiment may not be perfect, the Holling paper is one of the most fundamental papers in studying predator/prey interactions. I think it is also important to note that this was one of the first chapters of his dissertation,and we are reading it today.The idea of an functional response has become fundamental in ecology. And as someone who has conducted experimental functional responses, I can personally attest to how much work went in his paper. They are definitely not the easiest thing to do, especially starting from scratch.

    I'm not as impressed with the Weed paper as some. I understand that the big result is the that populations of prey and predator are tightly linked. To me this is not really new, as MacLulich in 1937 showed with his famous lynx and hare paper. I suppose the important aspect is that this paper is done across a much larger scale. I am probably bias by being unfamiliar with this area. I did appreciate the practicality of the Weed paper.

    -Miranda

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  5. The Holling’s paper is very interesting to me in the way he controlled the variables – using cocoons as the prey. But on the other hand, cocooned flies are a special stage of prey, and it excluded most of the predator-prey interactions because cocoons did not move nor defense. I am curious to what extent the conclusion could apply to other predator-prey relationships. My another awareness is that the alternative food used in this experiment. First, I think there must be a better alternative food than biscuit in order to study the natural predator-prey interactions. Like the author mentioned, deer mice preferred sunflower seeds than biscuits. I think an ideal alternative food should have similar attractiveness as the prey and should exist in their natural habitat. Second, just like there was a small variety of alternative food in nature, would a mixture of alternative food work better? Overall, this paper is fascinating to me and I enjoyed the detailed methods section. But maybe I missed something in the methods, I was wondering how did he distinguish cocoons broken by Sorex and those broken by Blarina since the 2 predators existed in the same plot (Fig 1)? Or he estimated the latter using the difference between the total broken cocoons and the Sorex-eaten cocoons estimated from the cage experiment? I am not sure if they are comparable.
    The companion paper is a good application of predator-prey interaction on pest control. I don’t quite understand the right side of figure 3 and figure 4. It seems that there was a shift of correlations from positive to negative for some coefficients. Is that caused by a spatial asynchrony?

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  6. I really enjoyed reading Holling, I think he had tons of fascinating insights and predictions. I thought his idea about how alternative prey can stabilize consumer-resource dynamics was interesting and may be relevant to the Weed et al. paper. His point about how the mode of prey detection (sight vs. smell) alters the speed at which functional responses saturate was insightful. I’m not very familiar with predator-prey interactions and would be interested to know how these ideas stands up today.
    Some questions I had about Holling were: 1. Why does Holling’s type I functional response have a maximum? I never saw that when it was presented in intro ecology courses. Why was this functional form changed? 2. In what situations would we observe a predator with an inverse numerical response? When prey are poisonous?
    I also really enjoyed reading Weed et al. I enjoyed reading how they tied longitudinal data with mechanistic models to determine that the consumer-resource dynamics did not exhibit cycling as previously thought. Something I was confused by is that they found the predator had an instantaneous response to the prey abundance, which doesn’t seem consistent with the fact that the predators have slower generation times.
    I didn’t really understand the spatial stuff Weed et al. discussed. I don’t understand how they can make statements about the impact of spatially correlated environmental forcing when (as far as I understand) none of their models explicitly included environmental forcing. Moreover, since the predator is a generalist, it seems like a sub-optimal modeling choice to use models that describe specialist predator-prey interactions. I do think their finding that the sign of the effect of predators on prey was variable is indicative that their may be important indirect effects of predators on prey, e.g., apparent competition.

    - David

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  7. I really enjoyed reading the Holling paper. I've read the complement to this paper that describes the Type II functional response in greater mathematical detail several times, so it was really interesting to see how his empirical observations led to the development of the model. The cycle between field observation, lab experimentation, and mathematical modeling is how I endeavor to do science, and it was really fascinating to see how it can be executed to such effect. I do agree with others that the writing was a bit dense and some of the methods questionable, but I think that's largely a matter of the time in which the work was done.

    The Weed et al. paper is a great complement to the Holling paper in that it also successfully executes a study linking a mechanistic understanding of a fine-scale predator-prey interaction to a macroecological pattern via mathematical modeling. I especially enjoyed the discussion of the consequences of scale choice in ecological modeling and think this approach could be implemented in a wide range of scenarios.

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  8. I have heard Holling's work brought up, referenced, and built upon numerous times in ecology courses but have not previously gotten a chance to actually sit down and read his classic paper in its entirety. His work has been very influential in understandings of prey-predator dynamics and I found it fascinating to read the original paper. The experimental design was not completely without fault, as others have mentioned, but it was clear to follow his logic and he was able to decently back up his overall conclusions in spite of some imperfections with the design.

    The Weed paper was a great read as well, and tied in very nicely with Holling's classic paper - a great choice for a companion piece.

    - Elizabeth

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  9. I was interested to read the Holling paper because I have heard him referred to as the "father" of resilience theory, but I had not read about his work on predator-prey interactions (which he is apparently much more well known for). I appreciated his combination of field and lab experiments to help answer his research questions, but like everyone else, I wish he had done more replicates in the lab with a larger sample size (n=3 is a bit ridiculous). I was a bit taken aback by one of his concluding sentences, "The scheme of predation presented here is sufficient to explain all types of predation as well as insect parasitism." As bold a claim as this is, I do not think he backed this up sufficiently with the results of his lab or field work.

    I was not blown away by the Weed et al. paper. I initially liked that they were looking at the emergence of regional patterns based on local processes—intentional or not, this was a nice tip of the hat to Holling considering Holling both pioneered the functional response and later fathered resilience theory and was entrenched in complexity science. I guess my ultimate disappointment was that they did not find the complex interactions they proposed and instead brought these large-scale effects back purely to the effects of large scale processes—weather patterns. I was also not impressed that they felt justified drawing a line through the data in figure 6c.. You can draw a regression line through any dataset you want, but that does not make it useful or meaningful..

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